{"id":12439,"date":"2024-04-14T15:54:48","date_gmt":"2024-04-14T19:54:48","guid":{"rendered":"https:\/\/ccna-ccnv.ca\/?post_type=ccna_publication&#038;p=12439"},"modified":"2025-03-14T15:55:01","modified_gmt":"2025-03-14T19:55:01","slug":"identifying-biases-in-a-multicenter-mri-database-for-parkinsons-disease-classification-is-the-disease-classifier-a-secret-site-classifier","status":"publish","type":"ccna_publication","link":"https:\/\/ccna-ccnv.ca\/fr\/ccna_publication\/identifying-biases-in-a-multicenter-mri-database-for-parkinsons-disease-classification-is-the-disease-classifier-a-secret-site-classifier\/","title":{"rendered":"Identifying biases in a multicenter MRI database for Parkinson&rsquo;s disease classification: Is the disease classifier a secret site classifier?"},"content":{"rendered":"<h2>Abstract<\/h2>\n<p>Sharing multicenter imaging datasets can be advantageous to increase data diversity and size but may lead to spurious correlations between site-related biological and non-biological image features and target labels, which machine learning (ML) models may exploit as shortcuts. To date, studies analyzing how and if deep learning models may use such effects as a shortcut are scarce. Thus, the aim of this work was to investigate if site-related effects are encoded in the feature space of an established deep learning model designed for Parkinson&rsquo;s disease (PD) classification based on T1-weighted MRI datasets. Therefore, all layers of the PD classifier were frozen, except for the last layer of the network, which was replaced by a linear layer that was exclusively re-trained to predict three potential bias types (biological sex, scanner type, and originating site). Our findings based on a large database consisting of 1880 MRI scans collected across 41 centers show that the feature space of the established PD model (74% accuracy) can be used to classify sex (75% accuracy), scanner type (79% accuracy), and site location (71% accuracy) with high accuracies despite this information never being explicitly provided to the PD model during original training. Overall, the results of this study suggest that trained image-based classifiers may use unwanted shortcuts that are not meaningful for the actual clinical task at hand. This finding may explain why many image-based deep learning models do not perform well when applied to data from centers not contributing to the training set.<\/p>\n","protected":false},"author":14,"featured_media":0,"template":"","meta":{"_acf_changed":false},"studies-relation":[],"class_list":["post-12439","ccna_publication","type-ccna_publication","status-publish","hentry"],"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v25.8 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Identifying biases in a multicenter MRI database for Parkinson&#039;s disease classification: Is the disease classifier a secret site classifier? - CCNA - CCNV<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/ccna-ccnv.ca\/fr\/ccna_publication\/identifying-biases-in-a-multicenter-mri-database-for-parkinsons-disease-classification-is-the-disease-classifier-a-secret-site-classifier\/\" \/>\n<meta property=\"og:locale\" content=\"fr_CA\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Identifying biases in a multicenter MRI database for Parkinson&#039;s disease classification: Is the disease classifier a secret site classifier? - CCNA - CCNV\" \/>\n<meta property=\"og:description\" content=\"Abstract Sharing multicenter imaging datasets can be advantageous to increase ...\" \/>\n<meta property=\"og:url\" content=\"https:\/\/ccna-ccnv.ca\/fr\/ccna_publication\/identifying-biases-in-a-multicenter-mri-database-for-parkinsons-disease-classification-is-the-disease-classifier-a-secret-site-classifier\/\" \/>\n<meta property=\"og:site_name\" content=\"CCNA - CCNV\" \/>\n<meta property=\"article:modified_time\" content=\"2025-03-14T19:55:01+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/ccna-ccnv.ca\/wp-content\/uploads\/2025\/01\/CCNA.jpg\" \/>\n\t<meta property=\"og:image:width\" content=\"1200\" \/>\n\t<meta property=\"og:image:height\" content=\"675\" \/>\n\t<meta property=\"og:image:type\" content=\"image\/jpeg\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\/\/ccna-ccnv.ca\/fr\/ccna_publication\/identifying-biases-in-a-multicenter-mri-database-for-parkinsons-disease-classification-is-the-disease-classifier-a-secret-site-classifier\/\",\"url\":\"https:\/\/ccna-ccnv.ca\/fr\/ccna_publication\/identifying-biases-in-a-multicenter-mri-database-for-parkinsons-disease-classification-is-the-disease-classifier-a-secret-site-classifier\/\",\"name\":\"Identifying biases in a multicenter MRI database for Parkinson's disease classification: Is the disease classifier a secret site classifier? 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